standalone software
Java GUI version CRISPR-Local-java.zip
Linux command line version CRISPR-Local-linux.zip
Linux command program running environment miniconda2_crispr_environment.tar.gz
Get the lasted CRISPR-Local source code on Github
database (built by RD-build.pl) of some genome for Cas9 (NGG) and Cpf1 (TTTV and TTV)
| Id | Genome | source | download (Cas9) | download (Cpf1 TTTV) | download (Cpf1 TTV) |
|---|---|---|---|---|---|
| 1 | Aegilops tauschii (ASM34733v1) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 2 | Amaranthus hypochondriacus (v.PGA2_1_2212017) | CoGe | Cas9 | Cpf1 | Cpf1 |
| 3 | Amborella trichopoda (v1.0) | JGI | Cas9 | Cpf1 | Cpf1 |
| 4 | Ananas comosus (v6) | CoGe | Cas9 | Cpf1 | Cpf1 |
| 5 | Arabidopsis lyrata (v.1.0) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 6 | Arabidopsis thaliana (TAIR10) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 7 | Arachis duranensis (aradu.V14167.gnm1) | CoGe | Cas9 | Cpf1 | Cpf1 |
| 8 | Arachis ipaensis (v2) | CoGe | Cas9 | Cpf1 | Cpf1 |
| 9 | Azolla filiculoides (v1.1) | CoGe | Cas9 | Cpf1 | Cpf1 |
| 10 | Beta vulgaris (RefBeet-1.2.2) | Ensembl Plant | Cas9 | Cpf1 | Cpf1 |
| 11 | Brachypodium distachyon (v1.0) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 12 | Brachypodium stacei (v2) | CoGe | Cas9 | Cpf1 | Cpf1 |
| 13 | Brassica napus (AST_PRJEB5043_v1) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 14 | Brassica oleracea (v2.1) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 15 | Brassica rapa (IVFCAASv1) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 16 | Calotropis gigantea (v1) | CoGe | Cas9 | Cpf1 | Cpf1 |
| 17 | Cardamine hirsuta (v1) | CoGe | Cas9 | Cpf1 | Cpf1 |
| 18 | Catharanthus roseus (v1) | CoGe | Cas9 | Cpf1 | Cpf1 |
| 19 | Chenopodium quinoa (v1.0) | JGI | Cas9 | Cpf1 | Cpf1 |
| 20 | Chlamydomonas reinhardtii (v3.1) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 21 | Cicer arietinum (v1.0) | JGI | Cas9 | Cpf1 | Cpf1 |
| 22 | Citrus sinensis (v2.0) | CsiDB | Cas9 | Cpf1 | Cpf1 |
| 23 | Cucumis melo (v3.5) | MELONOMICS | Cas9 | Cpf1 | Cpf1 |
| 24 | Cucumis sativus | phytozome v9.0 | Cas9 | Cpf1 | Cpf1 |
| 25 | Cyanidioschyzon merolae (ASM9120v1) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 26 | Daucus carota (v2) | JGI | Cas9 | Cpf1 | Cpf1 |
| 27 | Eucalyptus grandis (v2.0) | JGI | Cas9 | Cpf1 | Cpf1 |
| 28 | Fragaria vesca (v1.1) | JGI | Cas9 | Cpf1 | Cpf1 |
| 29 | Glycine max (V1.0) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 30 | Gossypium hirsutum (v1.1) | Cottongen | Cas9 | Cpf1 | Cpf1 |
| 31 | Helianthus annuus (r1.2) | JGI | Cas9 | Cpf1 | Cpf1 |
| 32 | Hordeum vulgare (Hv_IBSC_PGSB_v2) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 33 | Humulus lupulus (v1.1) | CoGe | Cas9 | Cpf1 | Cpf1 |
| 34 | Kalanchoe fedtschenkoi (v1.1) | JGI | Cas9 | Cpf1 | Cpf1 |
| 35 | Lactuca sativa (v8) | CoGe | Cas9 | Cpf1 | Cpf1 |
| 36 | Lentinula edodes (W1-26) | Cas9 | Cpf1 | Cpf1 | |
| 37 | Lotus japonicus (v3.0) | Miyakogusa v3.0 | Cas9 | Cpf1 | Cpf1 |
| 38 | Malus domestica (v1.0) | JGI | Cas9 | Cpf1 | Cpf1 |
| 39 | Manihot esculenta (v6) | Ensembl Plant | Cas9 | Cpf1 | Cpf1 |
| 40 | Marchantia polymorpha (v3.1) | JGI | Cas9 | Cpf1 | Cpf1 |
| 41 | Medicago truncatula (MedtrA17_4.0) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 42 | Musa acuminata (MA1) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 43 | Nicotiana benthamiana (v0.4.4) | Sol Genomics Network (SGN) | Cas9 | Cpf1 | Cpf1 |
| 44 | Oryza brachyantha (v1.4b) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 45 | Oryza glaberrima (AGI1.1) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 46 | Oryza sativa (MSU-7.0) | Rice Genome Annotation Project | Cas9 | Cpf1 | Cpf1 |
| 47 | Oryza sativa Indica (ASM465v1) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 48 | Oryza sativa Japonica (IRGSP-1.0) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 49 | Oryza sativa subsp. indica Minghui 63 | RIGW | Cas9 | Cpf1 | Cpf1 |
| 50 | Oryza sativa subsp. indica Zhenshan 97 | RIGW | Cas9 | Cpf1 | Cpf1 |
| 51 | Panicum miliaceum (V1) | CoGe | Cas9 | Cpf1 | Cpf1 |
| 52 | Panicum virgatum (v4.1) | JGI | Cas9 | Cpf1 | Cpf1 |
| 53 | Phaseolus vulgaris (V1) | CoGe | Cas9 | Cpf1 | Cpf1 |
| 54 | Physcomitrella patens (ASM242v1) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 55 | Populus trichocarpa (JGI2.0) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 56 | Prunus mume (v1) | CoGe | Cas9 | Cpf1 | Cpf1 |
| 57 | Salvinia cucullata (v1.2) | CoGe | Cas9 | Cpf1 | Cpf1 |
| 58 | Selaginella moellendorffii (v1.0) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 59 | Setaria italica (v2.2) | JGI | Cas9 | Cpf1 | Cpf1 |
| 60 | Setaria viridis (v2.1) | JGI | Cas9 | Cpf1 | Cpf1 |
| 61 | Solanum lycopersicum (SL3.0) | SGN | Cas9 | Cpf1 | Cpf1 |
| 62 | Solanum tuberosum (SolTub_3.0) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 63 | Sorghum bicolor (v2) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 64 | Theobroma cacao (v1.1) | JGI | Cas9 | Cpf1 | Cpf1 |
| 65 | Triticum aestivum (TGACv1) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 66 | Triticum urartu (ASM34745v1) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 67 | Vigna angularis (vigan.Gyeongwon.gnm3) | CoGe | Cas9 | Cpf1 | Cpf1 |
| 68 | Vigna unguiculata (v1.1) | JGI | Cas9 | Cpf1 | Cpf1 |
| 69 | Vitis vinifera (IGGP_12x) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 70 | Zea mays (AGPv3) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 71 | Zea mays (AGPv4) | Ensembl Plants | Cas9 | Cpf1 | Cpf1 |
| 72 | Medicago_truncatula_R108 | Cas9 |